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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
97
total RNA-seq
86
ChIP-seq
49
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
242
Transcription
86
DNA binding
60
DNA accessibility
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
62
February, 2023
54
May, 2022
47
September, 2023
May, 2020
40
September, 2020
19
April, 2020
16
January, 2021
12
February, 2021
5
March, 2023
4
March, 2020
Available data
137
bam
137
bigWig
86
bed narrowPeak
84
tagAlign
73
fastq
73
zippedFastqFolder
51
tsv
1
hic
Organism
406
Homo sapiens
Biosample type
305
primary cell
97
tissue
7
cell line
2
stem cell
Organ
183
pancreas
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
195
T1D
145
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
138
GRCh38
137
hg19
Lab
191
Kyle Gaulton, UCSD
145
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
1
inconsistent ontology term
audit.ERROR.category!
audit script error
award.project!
AMP
month_released!
April, 2018
May, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
411 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
51
84
1
Langerhans cell
85
21
exocrine cell
39
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
+ See 14 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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