Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
50
total RNA-seq
27
ChIP-seq
12
single cell RNA-seq
6
snATAC-seq
3
snDrop-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
63
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
23
April, 2019
14
May, 2023
4
July, 2019
4
October, 2019
3
February, 2021
1
December, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
57
txt
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
245
Homo sapiens
Biosample type
245
tissue
36
primary cell
19
cell line
Organ
547
connective tissue
488
adipose tissue
474
pancreas
361
liver
313
heart
265
brain
245
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
245
AMP
47
KPMP
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
142
Katalin Susztak, Upenn
103
AMP-T2D consortium
Audit category:
audit script error
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
245 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
snDrop-seq
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
49
27
12
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
See all biosamples
Download