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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
35
ATAC-seq
31
WGBS
13
ChIP-seq
12
single cell RNA-seq
Assay category
64
Transcription
35
DNA accessibility
31
DNA methylation
13
DNA binding
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
17
September, 2020
14
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
Available data
96
fastq
47
zippedFastqFolder
42
bigWig
41
bam
28
tsv
13
bed narrowPeak
6
bigBed narrowPeak
Organism
143
Homo sapiens
Biosample type
143
primary cell
Organ
143
epithelium
143
pancreas
Project
102
HPAP
41
AMP
Genome assembly (visualization)
42
GRCh38
35
hg19
Lab
102
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
audit script error
Audit category:
2
inconsistent control read length
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
143 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
52
35
31
13
12
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