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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
19
total RNA-seq
6
DNase-seq
4
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
22
DNA binding
19
Transcription
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
41
October, 2019
31
February, 2023
7
June, 2019
1
February, 2020
1
July, 2019
Available data
46
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tar
Organism
81
Homo sapiens
Biosample type
56
tissue
25
primary cell
Organ
847
pancreas
683
connective tissue
490
adipose tissue
439
epithelium
389
liver
328
kidney
324
heart
286
brain
167
vasculature
161
blood vessel
159
bone element
122
limb
93
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
49
hg19
18
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
audit script error
audit.ERROR.category!
audit script error
biosample_type!
cell line
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
17
2
1
retinal pigment epithelial cell
3
1
1
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