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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
4
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
85
October, 2019
82
November, 2017
28
May, 2019
16
October, 2017
3
July, 2019
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
bed bed3+
27
bigBed broadPeak
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
215
tissue
primary cell
Organ
601
liver
261
pancreas
232
kidney
215
brain
189
heart
163
connective tissue
128
blood vessel
128
vasculature
100
bone element
84
adipose tissue
79
artery
79
limb
78
epithelium
61
blood
61
bodily fluid
48
eye
42
musculature of body
36
nerve
23
spleen
20
embryo
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
215
AMP
Genome assembly (visualization)
167
GRCh38
117
hg19
Lab
215
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
audit script error
biosample_type!
primary cell
files.file_type!
bed bed3+
tsv
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
ATAC-seq
FAIRE-seq
RRBS
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
angular gyrus
15
caudate nucleus
15
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