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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
4
DNA accessibility
1
3D chromatin structure
Date released
4
February, 2023
2
August, 2021
1
February, 2021
1
October, 2019
Available data
bam
2556
bigWig
1522
bed narrowPeak
1321
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
155
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
3
tar
2
ibed
1
bedpe
1
csv
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
primary cell
2
cell line
Organ
6
connective tissue
1
liver
1
pancreas
Project
8
AMP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
biosample_type!
primary cell
files.file_type!
bam
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
Panc1
1
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