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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
total RNA-seq
84
RNA microarray
59
ChIP-seq
21
ATAC-seq
3
snDrop-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
159
Transcription
59
DNA binding
21
DNA accessibility
Target of assay
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
14
control
11
narrow histone mark
6
RNA binding protein
Date released
397
November, 2017
314
August, 2021
295
August, 2017
279
October, 2019
276
February, 2021
194
May, 2020
193
May, 2021
162
June, 2019
120
July, 2018
116
February, 2023
115
May, 2019
94
December, 2017
86
November, 2018
80
April, 2019
67
July, 2019
65
May, 2022
62
March, 2020
60
November, 2019
51
October, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2021
7
January, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
March, 2023
1
December, 2019
1
October, 2022
Available data
234
bam
203
bigWig
161
tsv
84
txt
62
bed narrowPeak
40
bigBed narrowPeak
35
fastq
8
tagAlign
4
bed bedgraph
1
bed bed3
1
bed bed3+
1
csv
Organism
327
Homo sapiens
Biosample type
205
tissue
96
cell line
26
in vitro differentiated cells
primary cell
Organ
475
connective tissue
adipose tissue
150
bone element
77
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
8
skeleton
6
limb
3
kidney
3
liver
Project
327
AMP
Genome assembly (visualization)
225
hg19
220
GRCh38
Lab
327
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent control read length
audit.ERROR.category!
audit script error
biosample_type!
primary cell
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
327 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
snDrop-seq
pCHi-C
single cell RNA-seq
tissue
bone element
84
bone tissue
58
body of pancreas
33
endocrine pancreas
16
pancreas
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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