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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
3
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
3
November, 2017
2
October, 2019
1
February, 2021
Available data
516
bam
466
bigWig
427
fastq
392
bed narrowPeak
355
bigBed narrowPeak
67
tsv
59
bed broadPeak
59
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
6
Homo sapiens
Biosample type
177
tissue
35
primary cell
25
in vitro differentiated cells
6
cell line
3
stem cell
Organ
4
liver
2
pancreas
Project
6
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
6
AMP-T2D consortium
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
organ_slims!
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BIOSAMPLE
ASSAY
6 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
3
1
Panc1
1
1
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