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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
88
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
136
Transcription
88
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
127
May, 2021
26
February, 2021
25
August, 2017
23
February, 2018
17
August, 2021
14
February, 2023
9
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
260
Homo sapiens
Biosample type
1779
tissue
762
primary cell
260
in vitro differentiated cells
258
cell line
8
stem cell
Organ
52
connective tissue
15
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
260
AMP
Genome assembly (visualization)
166
hg19
137
GRCh38
4
hg18
Lab
210
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
audit script error
Audit category:
6
missing controlled_by
audit.ERROR.category!
audit script error
files.file_type!
bed narrowPeak
month_released!
March, 2019
BIOSAMPLE
ASSAY
260 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
38
5
1
adipocyte
5
25
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
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