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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
37
ATAC-seq
4
GRO-seq
2
pCHi-C
1
DNase-seq
Assay category
198
DNA binding
136
Transcription
38
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
Available data
291
bam
254
bigWig
141
fastq
129
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
378
Homo sapiens
Biosample type
2758
tissue
1056
primary cell
660
cell line
378
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
378
AMP
Genome assembly (visualization)
284
hg19
265
GRCh38
4
hg18
Lab
331
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
audit.ERROR.category!
audit script error
files.file_type!
bedpe bed3+
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
378 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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