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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
86
ChIP-seq
42
ATAC-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
135
Transcription
86
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
110
May, 2021
31
August, 2017
28
August, 2021
26
February, 2021
23
February, 2018
19
December, 2017
16
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
4
January, 2018
1
August, 2018
Available data
211
bam
180
bigWig
128
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
277
Homo sapiens
Biosample type
1922
tissue
809
primary cell
558
cell line
277
in vitro differentiated cells
8
stem cell
Organ
60
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
heart
Project
277
AMP
Genome assembly (visualization)
217
hg19
186
GRCh38
4
hg18
Lab
243
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
audit.ERROR.category!
audit script error
files.file_type!
ibed
organ_slims!
heart
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
277 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
8
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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