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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
120
ChIP-seq
16
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
120
DNA binding
17
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
49
August, 2017
38
December, 2017
31
February, 2018
24
August, 2021
22
February, 2021
7
February, 2023
4
January, 2018
4
March, 2020
4
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
272
Homo sapiens
Biosample type
1926
tissue
632
primary cell
537
cell line
272
in vitro differentiated cells
8
stem cell
Organ
64
connective tissue
22
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
272
AMP
Genome assembly (visualization)
265
hg19
248
GRCh38
4
hg18
Lab
260
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
98
inconsistent ontology term
audit script error
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
4
1
1
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
13
1
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