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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
1
DNase-seq
Assay category
142
DNA binding
134
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
122
May, 2021
48
August, 2017
35
August, 2021
32
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
1
August, 2018
Available data
250
bam
218
bigWig
127
tsv
110
fastq
93
bed narrowPeak
26
tagAlign
21
bed bed3+
8
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
328
Homo sapiens
Biosample type
2262
tissue
914
primary cell
617
cell line
328
in vitro differentiated cells
9
stem cell
Organ
75
connective tissue
25
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
328
AMP
Genome assembly (visualization)
253
hg19
224
GRCh38
4
hg18
Lab
284
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
47
5
6
1
1
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
pancreatic endoderm
14
4
1
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