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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
274
DNA binding
260
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
120
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
32
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
609
bigWig
604
bam
382
fastq
291
bed narrowPeak
270
tsv
153
zippedFastqFolder
105
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
tar
Organism
1050
Homo sapiens
Biosample type
2495
tissue
1050
primary cell
659
cell line
392
in vitro differentiated cells
10
stem cell
Organ
396
epithelium
343
pancreas
39
connective tissue
35
vasculature
31
kidney
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
552
AMP
294
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
619
hg19
532
GRCh38
Lab
517
AMP-T2D consortium
294
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
files.file_type!
tar
month_released!
May, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
1050 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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