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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ChIP-seq
3
DNase-seq
2
total RNA-seq
1
pCHi-C
Assay category
4
3D chromatin structure
3
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
June, 2019
4
July, 2019
3
August, 2021
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
520
bigWig
496
bam
324
fastq
270
tsv
215
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
43
bigBed narrowPeak
13
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
13
Homo sapiens
Biosample type
18
in vitro differentiated cells
15
tissue
13
primary cell
3
cell line
3
stem cell
Organ
7
epithelium
4
blood vessel
4
liver
4
vasculature
3
brain
3
connective tissue
2
vein
Project
13
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
11
AMP-T2D consortium
2
Kyle Gaulton, UCSD
audit.ERROR.category!
audit script error
month_released!
August, 2017
June, 2019
BIOSAMPLE
ASSAY
13 results
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Hi-C
ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
osteoblast
1
1
astrocyte of the cerebellum
1
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