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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
41
ChIP-seq
29
ATAC-seq
6
WGBS
Assay category
248
Transcription
41
DNA binding
29
DNA accessibility
6
DNA methylation
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
76
February, 2023
73
September, 2018
August, 2017
48
July, 2018
41
September, 2020
38
April, 2018
18
February, 2021
9
November, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
520
bigWig
496
bam
324
fastq
270
tsv
215
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
43
bigBed narrowPeak
13
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
324
Homo sapiens
Biosample type
427
cell line
324
primary cell
202
tissue
87
in vitro differentiated cells
4
stem cell
Organ
217
pancreas
209
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
182
AMP
142
HPAP
Genome assembly (visualization)
187
GRCh38
180
hg19
Lab
182
AMP-T2D consortium
142
Klaus Kaestner, Upenn
Audit category:
audit script error
7
inconsistent ontology term
Audit category:
32
missing controlled_by
audit.ERROR.category!
audit script error
month_released!
August, 2017
June, 2019
BIOSAMPLE
ASSAY
324 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
12
52
12
6
pancreatic beta cell
12
21
9
exocrine cell
39
Langerhans cell
34
pancreatic ductal cell
9
4
13
4
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