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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
242
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
279
DNA binding
261
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
608
bigWig
604
bam
382
fastq
295
bed narrowPeak
265
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
1051
Homo sapiens
Biosample type
2609
tissue
1051
primary cell
662
cell line
385
in vitro differentiated cells
10
stem cell
Organ
397
epithelium
343
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
musculature of body
13
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
553
AMP
294
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
619
hg19
531
GRCh38
Lab
518
AMP-T2D consortium
294
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
lab.title!
Struan F.A. Grant, CHOP
month_released!
December, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
1051 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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