Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
197
ATAC-seq
187
single cell RNA-seq
97
ChIP-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
9
RRBS
6
Hi-C
5
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
232
DNA accessibility
97
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
180
histone
180
histone modification
broad histone mark
82
narrow histone mark
14
control
4
RNA binding protein
4
transcription factor
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
July, 2018
June, 2019
43
April, 2018
August, 2017
31
July, 2019
21
February, 2021
21
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
426
bigWig
420
bam
307
fastq
270
tsv
153
zippedFastqFolder
123
bed narrowPeak
43
tagAlign
36
bigBed narrowPeak
12
bed bed3+
9
bed bedMethyl
9
bed broadPeak
9
bigBed bedMethyl
9
bigBed broadPeak
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
845
Homo sapiens
Biosample type
2091
tissue
845
primary cell
643
cell line
288
in vitro differentiated cells
9
stem cell
Organ
328
epithelium
285
pancreas
23
vasculature
22
connective tissue
19
blood vessel
18
kidney
16
brain
12
vein
11
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
390
AMP
294
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
443
hg19
375
GRCh38
Lab
375
AMP-T2D consortium
294
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
29
inconsistent ontology term
Audit category:
15
missing controlled_by
audit.ERROR.category!
audit script error
month_released!
August, 2017
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
845 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
34
12
31
monocyte
54
15
41
1
1
Langerhans cell
85
21
pancreatic beta cell
21
22
12
16
exocrine cell
39
+ See 88 more…
See all biosamples
Download