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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
RRBS
Assay category
8
DNA binding
4
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
3
control
3
histone
3
histone modification
3
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
12
June, 2019
6
July, 2019
Available data
16
bam
13
bigWig
9
bed narrowPeak
9
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
369
tissue
66
cell line
18
primary cell
1
in vitro differentiated cells
Organ
373
epithelium
302
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
18
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
audit.ERROR.category!
audit script error
month_released!
August, 2017
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
cardiac fibroblast
5
3
1
retinal pigment epithelial cell
3
1
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
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