Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
91
total RNA-seq
70
single cell RNA-seq
65
ATAC-seq
47
WGBS
18
DNase-seq
6
RRBS
3
Hi-C
1
FAIRE-seq
Assay category
161
Transcription
92
DNA binding
84
DNA accessibility
53
DNA methylation
3
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
October, 2018
1
June, 2018
1
March, 2020
Available data
240
bam
229
fastq
222
bigWig
114
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
hdf5
1
bedpe bed3+
1
hic
1
tar
Organism
393
Homo sapiens
Biosample type
393
primary cell
79
cell line
24
in vitro differentiated cells
14
tissue
Organ
393
epithelium
334
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
251
AMP
142
HPAP
Genome assembly (visualization)
221
hg19
216
GRCh38
Lab
251
AMP-T2D consortium
142
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
August, 2020
October, 2018
BIOSAMPLE
ASSAY
393 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
30
31
pancreatic beta cell
13
21
12
21
16
pancreatic acinar cell
8
2
12
9
pancreatic ductal cell
13
4
10
4
endothelial cell of umbilical vein
17
2
1
1
+ See 19 more…
See all biosamples
Download