Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
200
total RNA-seq
139
single cell RNA-seq
100
ATAC-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
10
RRBS
7
DNase-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
341
Transcription
248
DNA binding
137
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
428
bigWig
416
bam
334
fastq
248
bed narrowPeak
177
tsv
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
807
Homo sapiens
Biosample type
2292
tissue
807
primary cell
661
cell line
392
in vitro differentiated cells
10
stem cell
Organ
349
epithelium
306
pancreas
32
vasculature
28
blood vessel
23
kidney
21
vein
20
connective tissue
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
353
AMP
294
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
446
hg19
396
GRCh38
Lab
318
AMP-T2D consortium
294
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
15
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
July, 2018
June, 2019
May, 2020
BIOSAMPLE
ASSAY
807 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
pancreatic alpha cell
13
52
5
35
31
Langerhans cell
85
21
pancreatic beta cell
13
21
3
23
16
exocrine cell
39
+ See 62 more…
See all biosamples
Download