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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
total RNA-seq
216
ChIP-seq
186
ATAC-seq
138
single cell RNA-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
10
RRBS
7
DNase-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
361
Transcription
223
DNA accessibility
216
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
186
histone
186
histone modification
97
broad histone mark
89
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
June, 2019
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
446
bigWig
434
bam
261
fastq
202
bed narrowPeak
196
tsv
153
zippedFastqFolder
100
tagAlign
48
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
csv
1
tar
Organism
881
Homo sapiens
Biosample type
2485
tissue
881
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
288
epithelium
234
pancreas
32
vasculature
28
blood vessel
23
kidney
21
vein
20
connective tissue
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
382
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
464
hg19
369
GRCh38
Lab
347
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
23
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
July, 2018
June, 2019
September, 2018
BIOSAMPLE
ASSAY
881 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
42
13
32
5
31
Langerhans cell
85
21
pancreatic beta cell
11
13
19
3
16
CD8-positive, alpha-beta T cell
4
33
2
1
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