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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
162
total RNA-seq
128
ATAC-seq
102
single cell RNA-seq
30
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
266
Transcription
209
DNA binding
188
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
40
September, 2020
33
October, 2019
31
July, 2019
18
August, 2017
15
February, 2021
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
405
bigWig
398
bam
225
bed narrowPeak
147
tsv
113
fastq
100
tagAlign
86
bigBed narrowPeak
73
zippedFastqFolder
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
697
Homo sapiens
Biosample type
2264
tissue
697
primary cell
570
cell line
389
in vitro differentiated cells
10
stem cell
Organ
369
epithelium
pancreas
36
kidney
36
vasculature
31
connective tissue
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
347
AMP
204
T1D
145
HPAP
1
ITG
Genome assembly (visualization)
425
hg19
327
GRCh38
Lab
312
AMP-T2D consortium
239
Kyle Gaulton, UCSD
145
Klaus Kaestner, Upenn
1
ITG
Audit category:
48
inconsistent ontology term
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
July, 2018
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
697 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
21
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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