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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
87
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
6
RRBS
3
Hi-C
1
FAIRE-seq
Assay category
163
Transcription
91
DNA accessibility
87
DNA binding
53
DNA methylation
3
3D chromatin structure
Target of assay
63
histone
63
histone modification
34
narrow histone mark
29
broad histone mark
20
control
4
RNA binding protein
4
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
2
October, 2018
1
June, 2018
1
March, 2020
Available data
238
fastq
237
bam
227
bigWig
116
tsv
102
bed narrowPeak
80
zippedFastqFolder
57
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
hdf5
1
bedpe bed3+
1
hic
1
tar
Organism
397
Homo sapiens
Biosample type
397
primary cell
79
cell line
24
in vitro differentiated cells
14
tissue
Organ
397
epithelium
343
pancreas
39
connective tissue
36
vasculature
31
kidney
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
Project
248
AMP
149
HPAP
Genome assembly (visualization)
221
GRCh38
219
hg19
Lab
248
AMP-T2D consortium
149
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
May, 2019
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
397 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
pancreatic beta cell
21
13
23
12
16
pancreatic acinar cell
4
8
9
12
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
17
2
1
1
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