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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
18
DNase-seq
12
total RNA-seq
6
RRBS
4
single cell RNA-seq
3
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
45
DNA binding
20
DNA accessibility
16
Transcription
6
DNA methylation
3
3D chromatin structure
Target of assay
31
histone
31
histone modification
16
narrow histone mark
15
broad histone mark
9
control
5
RNA binding protein
5
transcription factor
Date released
32
October, 2019
20
June, 2019
13
July, 2019
6
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
2
April, 2018
2
July, 2018
1
March, 2020
Available data
79
bam
70
bigWig
49
bed narrowPeak
39
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
16
tsv
10
fastq
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
hdf5
1
bedpe bed3+
1
hic
1
tar
Organism
90
Homo sapiens
Biosample type
90
primary cell
21
in vitro differentiated cells
14
tissue
2
cell line
Organ
402
epithelium
pancreas
36
kidney
36
vasculature
33
connective tissue
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
90
AMP
Genome assembly (visualization)
72
hg19
64
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
month_released!
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
single cell RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
10
1
1
1
hepatocyte
4
1
5
1
kidney epithelial cell
5
1
1
1
brain microvascular endothelial cell
3
1
1
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