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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
1
DNase-seq
1
RRBS
1
small RNA-seq
1
total RNA-seq
Assay category
6
DNA binding
2
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
8
histone
8
histone modification
broad histone mark
4
narrow histone mark
2
control
Date released
7
June, 2019
3
July, 2019
Available data
9
bam
7
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
2
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
10
Homo sapiens
Biosample type
65
tissue
10
primary cell
Organ
351
epithelium
316
pancreas
35
connective tissue
23
kidney
21
brain
16
vasculature
13
heart
12
liver
10
blood vessel
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
10
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
audit.ERROR.category!
audit script error
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
DNase-seq
RRBS
small RNA-seq
total RNA-seq
primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
1
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