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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
26
ChIP-seq
18
DNase-seq
6
RRBS
3
Hi-C
1
FAIRE-seq
Assay category
163
Transcription
91
DNA accessibility
53
DNA methylation
26
DNA binding
3
3D chromatin structure
Target of assay
66
histone
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
40
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
19
September, 2020
18
June, 2019
15
August, 2017
13
July, 2019
11
October, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
September, 2017
4
November, 2017
3
August, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
June, 2018
1
March, 2020
Available data
201
fastq
176
bam
168
bigWig
116
tsv
80
zippedFastqFolder
45
bed narrowPeak
44
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
hdf5
1
bedpe bed3+
1
hic
1
tagAlign
1
tar
Organism
336
Homo sapiens
Biosample type
336
primary cell
67
cell line
14
tissue
9
in vitro differentiated cells
Organ
336
epithelium
285
pancreas
31
connective tissue
26
kidney
19
vasculature
18
brain
14
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
6
musculature of body
6
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
187
AMP
149
HPAP
Genome assembly (visualization)
164
GRCh38
160
hg19
Lab
187
AMP-T2D consortium
149
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
organ_slims!
intestine
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
336 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
pancreatic beta cell
21
23
12
16
6
pancreatic acinar cell
4
9
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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