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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
104
single cell RNA-seq
24
pCHi-C
16
small RNA-seq
3
snDrop-seq
1
ATAC-seq
Assay category
1045
Transcription
1
DNA accessibility
Date released
447
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
32
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
Available data
1910
bam
1775
bigWig
1073
tsv
986
bed narrowPeak
561
bigBed narrowPeak
381
fastq
238
tagAlign
213
bed broadPeak
207
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
1073
Homo sapiens
Biosample type
1069
tissue
270
primary cell
129
in vitro differentiated cells
119
cell line
4
stem cell
Organ
458
connective tissue
399
adipose tissue
275
pancreas
154
liver
111
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
7
limb
7
musculature of body
5
eye
5
kidney
5
nerve
4
artery
2
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1073
AMP
Genome assembly (visualization)
918
hg19
917
GRCh38
Lab
1072
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
audit script error
4
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
1073 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
147
1
1
bone tissue
58
heart left ventricle
3
18
1
+ See 64 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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