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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
827
ChIP-seq
587
total RNA-seq
247
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
1
RNA microarray
Assay category
827
DNA binding
777
Transcription
455
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
568
histone modification
567
histone
301
narrow histone mark
266
broad histone mark
173
control
88
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
90
February, 2023
82
November, 2017
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
December, 2019
Available data
1376
bam
1263
bigWig
911
bed narrowPeak
622
tsv
497
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
67
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2134
Homo sapiens
Biosample type
2143
tissue
1036
primary cell
566
cell line
361
in vitro differentiated cells
10
stem cell
Organ
504
pancreas
360
liver
266
kidney
264
brain
256
heart
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
14
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2046
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1343
GRCh38
1232
hg19
Lab
1791
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
files.file_type!
bed bed3
month_released!
April, 2019
February, 2021
BIOSAMPLE
ASSAY
2143 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
292
68
1
6
6
4
3
1
1
4
liver
145
167
20
2
3
1
1
1
1
kidney
4
49
75
13
59
6
1
1
1
left cardiac atrium
40
1
18
body of pancreas
35
3
4
4
2
2
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