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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
897
ChIP-seq
587
total RNA-seq
247
ATAC-seq
174
single cell RNA-seq
169
DNase-seq
26
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
1
RNA microarray
Assay category
897
DNA binding
777
Transcription
445
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
90
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
December, 2019
Available data
1429
bam
1305
bigWig
959
bed narrowPeak
622
tsv
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
195
bed bed3+
167
bigBed broadPeak
67
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2188
Homo sapiens
Biosample type
2197
tissue
1035
primary cell
505
cell line
361
in vitro differentiated cells
10
stem cell
Organ
497
pancreas
353
liver
313
heart
289
kidney
262
brain
133
blood vessel
133
vasculature
116
limb
102
connective tissue
101
adipose tissue
81
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
spleen
14
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2100
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1385
GRCh38
1280
hg19
Lab
1845
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
files.file_type!
bed bed3
month_released!
February, 2021
November, 2018
BIOSAMPLE
ASSAY
2197 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
71
292
68
6
1
6
4
3
1
4
1
liver
141
167
20
1
3
1
1
1
kidney
27
49
75
59
13
6
1
1
1
heart left ventricle
35
3
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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