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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
522
ChIP-seq
253
ATAC-seq
175
single cell RNA-seq
149
DNase-seq
85
RNA microarray
26
snATAC-seq
23
pCHi-C
18
WGBS
16
Hi-C
12
small RNA-seq
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1112
Transcription
522
DNA binding
430
DNA accessibility
23
DNA methylation
16
3D chromatin structure
Target of assay
320
histone
320
histone modification
160
broad histone mark
160
narrow histone mark
133
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
540
February, 2021
August, 2017
229
August, 2021
193
May, 2020
155
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
65
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
December, 2019
Available data
1511
bam
1392
bigWig
957
tsv
726
bed narrowPeak
423
bigBed narrowPeak
190
fastq
151
bed bed3+
151
bed broadPeak
151
txt
149
bigBed broadPeak
64
xls
61
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
4
bed bed3
1
bedpe
1
csv
Organism
2216
Homo sapiens
Biosample type
2218
tissue
977
primary cell
662
cell line
324
in vitro differentiated cells
10
stem cell
Organ
490
connective tissue
431
adipose tissue
357
pancreas
313
heart
307
liver
292
kidney
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
55
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2121
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1498
GRCh38
1431
hg19
Lab
1866
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
1
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
August, 2017
organ_slims!
brain
skin of body
BIOSAMPLE
ASSAY
2218 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
29
66
6
6
4
3
1
4
liver
167
97
20
1
2
1
1
1
kidney
49
27
75
59
13
6
1
1
1
bone element
84
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