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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
777
ChIP-seq
221
ATAC-seq
151
DNase-seq
85
RNA microarray
82
single cell RNA-seq
26
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1113
Transcription
777
DNA binding
402
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
165
control
79
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
540
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
65
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
November, 2020
2
January, 2018
1
December, 2019
Available data
1768
bam
1612
bigWig
958
tsv
808
bed narrowPeak
470
bigBed narrowPeak
370
fastq
238
tagAlign
186
bed broadPeak
177
bed bed3+
151
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2435
Homo sapiens
Biosample type
2444
tissue
1038
primary cell
562
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
500
pancreas
488
adipose tissue
361
liver
heart
292
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2347
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1665
GRCh38
1638
hg19
Lab
2136
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
month_released!
December, 2018
November, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
2444 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
6
6
4
3
1
1
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
59
6
1
1
1
bone element
84
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