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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
total RNA-seq
144
ChIP-seq
133
ATAC-seq
75
DNase-seq
65
single cell RNA-seq
16
snATAC-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
3
FAIRE-seq
3
RRBS
3
small RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
401
Transcription
227
DNA accessibility
144
DNA binding
7
DNA methylation
4
3D chromatin structure
Target of assay
93
histone
93
histone modification
51
broad histone mark
42
narrow histone mark
35
control
18
transcription factor
9
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
130
August, 2021
120
July, 2018
72
June, 2019
51
October, 2018
47
September, 2023
39
November, 2019
37
May, 2021
24
May, 2022
23
April, 2019
18
February, 2023
14
May, 2023
10
July, 2019
9
March, 2020
8
January, 2021
7
November, 2018
7
October, 2019
6
April, 2018
6
September, 2017
March, 2019
5
October, 2017
4
November, 2020
3
February, 2021
2
May, 2019
1
December, 2019
1
February, 2020
Available data
526
bam
464
bigWig
280
tsv
276
bed narrowPeak
212
fastq
149
bigBed narrowPeak
95
bed bed3+
87
bed broadPeak
74
bigBed broadPeak
64
xls
63
txt
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
784
Homo sapiens
Biosample type
791
tissue
379
primary cell
111
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
499
pancreas
488
adipose tissue
361
liver
313
heart
292
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
714
AMP
47
KPMP
30
T1D
Genome assembly (visualization)
549
GRCh38
502
hg19
Lab
544
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
month_released!
March, 2019
BIOSAMPLE
ASSAY
791 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
snDrop-seq
pCHi-C
tissue
islet of Langerhans
278
50
54
1
6
6
2
4
1
1
kidney
49
27
75
13
59
6
1
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
2
4
1
2
1
1
1
endocrine pancreas
16
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