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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
733
total RNA-seq
667
ChIP-seq
159
ATAC-seq
144
DNase-seq
85
RNA microarray
76
single cell RNA-seq
21
pCHi-C
16
snATAC-seq
15
WGBS
13
small RNA-seq
9
Hi-C
8
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
822
Transcription
667
DNA binding
321
DNA accessibility
23
DNA methylation
9
3D chromatin structure
Target of assay
460
histone modification
459
histone
254
narrow histone mark
205
broad histone mark
142
control
65
transcription factor
10
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
540
February, 2021
231
October, 2019
193
May, 2020
137
August, 2017
135
August, 2021
132
June, 2019
92
May, 2019
82
November, 2017
51
July, 2019
48
December, 2017
47
September, 2023
41
February, 2023
41
May, 2022
24
March, 2020
23
April, 2019
23
October, 2018
21
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
2
January, 2018
1
December, 2019
1
May, 2021
1
November, 2019
Available data
1346
bam
1242
bigWig
688
bed narrowPeak
683
tsv
411
bigBed narrowPeak
222
tagAlign
166
bed broadPeak
164
fastq
150
bed bed3+
145
txt
143
bigBed broadPeak
64
xls
12
bed bedMethyl
12
bigBed bedMethyl
5
bed bed3
5
hic
4
bedpe bed3+
1
csv
1
tagAlign bed3+
Organism
1949
Homo sapiens
Biosample type
1951
tissue
701
primary cell
504
cell line
388
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
heart
292
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1884
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1282
GRCh38
1228
hg19
Lab
1702
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
audit.ERROR.category!
audit script error
organ_slims!
heart
pancreas
BIOSAMPLE
ASSAY
1951 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
59
6
1
1
1
bone element
84
bone tissue
58
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