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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
4
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
4
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
2
bedpe bed3+
2
hdf5
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
49
Homo sapiens
Biosample type
46
tissue
3
primary cell
Organ
253
pancreas
203
kidney
202
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
50
vasculature
49
adipose tissue
49
blood vessel
43
brain
39
artery
38
musculature of body
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
49
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
49
AMP-T2D consortium
Audit category:
audit script error
audit.ERROR.category!
audit script error
files.file_type!
bam
month_released!
April, 2020
October, 2018
BIOSAMPLE
ASSAY
49 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
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