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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
total RNA-seq
124
ATAC-seq
96
single cell RNA-seq
47
WGBS
27
snATAC-seq
1
Hi-C
Assay category
237
Transcription
151
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
128
August, 2021
76
February, 2023
59
September, 2020
18
February, 2021
14
May, 2023
7
August, 2020
Available data
153
zippedFastqFolder
142
fastq
64
bed narrowPeak
64
xls
57
txt
10
bigWig
6
tsv
1
hic
Organism
436
Homo sapiens
Biosample type
294
primary cell
142
tissue
Organ
149
epithelium
149
pancreas
142
kidney
Project
294
HPAP
142
AMP
Genome assembly (visualization)
85
GRCh38
1
hg19
Lab
2858
AMP-T2D consortium
343
Kyle Gaulton, UCSD
294
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
audit script error
audit.ERROR.category!
audit script error
files.file_type!
bigBed narrowPeak
month_released!
March, 2023
BIOSAMPLE
ASSAY
436 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
primary cell
Langerhans cell
85
21
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
tissue
kidney
49
75
11
6
1
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