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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
17
ChIP-seq
2
single cell RNA-seq
2
total RNA-seq
Assay category
43
DNA accessibility
17
DNA binding
4
Transcription
Target of assay
16
control
1
histone
1
histone modification
1
narrow histone mark
Date released
35
February, 2023
10
February, 2021
5
December, 2017
5
October, 2019
3
February, 2018
2
August, 2021
2
February, 2020
2
May, 2019
Available data
138
bam
bigWig
88
bed narrowPeak
72
tsv
27
fastq
25
bigBed narrowPeak
7
bed bed3+
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
Organism
64
Homo sapiens
Biosample type
46
tissue
10
cell line
8
in vitro differentiated cells
Organ
319
pancreas
218
epithelium
216
kidney
169
heart
169
liver
114
connective tissue
101
bone element
80
vasculature
79
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
44
GRCh38
9
hg19
Lab
64
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
audit.ERROR.category!
audit script error
files.file_type!
bigWig
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
tissue
coronary artery
35
2
1
tibial artery
5
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
2
in vitro differentiated cells
pancreatic endoderm
6
Hepatic endoderm
2
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