Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
17
ATAC-seq
13
single cell RNA-seq
9
ChIP-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
17
DNA accessibility
13
Transcription
9
DNA binding
6
DNA methylation
Target of assay
9
control
Date released
269
August, 2021
188
February, 2023
179
May, 2022
127
February, 2021
105
October, 2019
95
May, 2021
81
May, 2020
79
August, 2017
72
November, 2017
56
September, 2020
47
September, 2023
42
March, 2020
29
November, 2019
23
February, 2020
23
May, 2019
22
December, 2017
22
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
11
October, 2018
10
November, 2020
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
June, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
1
December, 2019
1
October, 2022
1
September, 2018
Available data
132
bam
bigWig
105
tsv
84
txt
29
fastq
27
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed bed3+
1
bed bed3
1
csv
Organism
133
Homo sapiens
Biosample type
102
tissue
18
primary cell
13
cell line
Organ
92
bone element
12
pancreas
10
artery
10
blood vessel
10
heart
10
vasculature
8
skeleton
6
epithelium
6
limb
connective tissue
3
kidney
3
liver
Project
115
AMP
18
HPAP
Genome assembly (visualization)
20
hg19
19
GRCh38
Lab
115
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
audit script error
1
inconsistent replicate
audit.ERROR.category!
audit script error
files.file_type!
bigWig
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
133 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
islet of Langerhans
6
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
12
pancreatic alpha cell
6
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
1
iPSC derived cell line
1
See all biosamples
Download