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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
4
ChIP-seq
1
ATAC-seq
1
pCHi-C
Assay category
9
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
8
January, 2021
4
October, 2019
1
January, 2018
1
March, 2020
Available data
60
bam
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
1
tsv
Organism
14
Homo sapiens
Biosample type
8
primary cell
5
tissue
1
cell line
Organ
578
connective tissue
467
pancreas
446
adipose tissue
301
heart
291
liver
265
brain
256
epithelium
223
vasculature
220
blood vessel
217
kidney
159
bone element
139
artery
122
limb
93
musculature of body
61
eye
43
nerve
21
vein
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
embryo
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
8
T1D
6
AMP
Genome assembly (visualization)
1
hg19
Lab
8
Kyle Gaulton, UCSD
6
AMP-T2D consortium
audit.ERROR.category!
audit script error
files.file_type!
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
14 results
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Clear Filters
snATAC-seq
ChIP-seq
ATAC-seq
pCHi-C
primary cell
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
4
ovary
1
cell line
GM12878
1
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