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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
2
ATAC-seq
2
pCHi-C
2
total RNA-seq
Assay category
10
3D chromatin structure
2
DNA accessibility
2
Transcription
Target of assay
3
histone
3
histone modification
narrow histone mark
Date released
368
November, 2017
234
August, 2017
207
June, 2019
199
May, 2022
189
February, 2023
185
August, 2021
162
May, 2021
156
October, 2019
129
February, 2021
125
May, 2020
88
November, 2018
86
May, 2019
78
December, 2017
63
October, 2018
59
September, 2020
57
April, 2019
47
September, 2023
43
July, 2019
37
November, 2019
35
December, 2018
32
September, 2018
25
May, 2024
22
January, 2019
21
October, 2017
16
February, 2018
16
January, 2021
16
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
1
August, 2018
1
December, 2019
1
October, 2022
Available data
tsv
17
bigWig
13
bam
12
bedpe bed3+
10
hic
2
ibed
Organism
16
Homo sapiens
Biosample type
10
tissue
4
in vitro differentiated cells
1
cell line
1
primary cell
Organ
5
pancreas
2
blood vessel
2
epithelium
2
heart
2
musculature of body
2
vasculature
1
liver
1
vein
Project
14
AMP
2
T1D
Genome assembly (visualization)
14
hg19
Lab
16
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
tsv
organ_slims!
lung
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
16 results
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Clear Filters
Hi-C
ATAC-seq
pCHi-C
total RNA-seq
tissue
islet of Langerhans
1
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
cell line
EndoC_BH1
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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