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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
15
WGBS
5
Hi-C
Assay category
30
DNA methylation
5
3D chromatin structure
Date released
27
July, 2019
7
November, 2018
August, 2017
1
October, 2019
Available data
3110
bam
2897
bigWig
1675
bed narrowPeak
1502
tsv
1044
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
239
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
20
tissue
13
primary cell
2
cell line
Organ
8
epithelium
8
heart
7
pancreas
5
brain
4
kidney
4
vasculature
3
blood vessel
3
liver
2
connective tissue
2
musculature of body
2
spleen
1
eye
1
limb
1
pericardium
Project
35
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
month_released!
August, 2017
BIOSAMPLE
ASSAY
35 results
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Clear Filters
RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
pancreas
1
2
body of pancreas
2
heart right ventricle
2
spleen
2
+ See 8 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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