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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
16
RRBS
16
WGBS
Assay category
64
DNA accessibility
32
DNA methylation
Date released
64
August, 2021
21
July, 2019
7
November, 2018
4
August, 2017
Available data
3335
bam
3101
bigWig
1757
bed narrowPeak
1582
tsv
1329
fastq
995
bigBed narrowPeak
383
tagAlign
276
bed broadPeak
252
bigBed broadPeak
239
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
96
Homo sapiens
Biosample type
86
tissue
9
primary cell
1
cell line
Organ
68
kidney
8
heart
6
epithelium
6
pancreas
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
96
AMP
Genome assembly (visualization)
80
GRCh38
16
hg19
Lab
64
Katalin Susztak, Upenn
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
csv
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
96 results
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ATAC-seq
RRBS
WGBS
tissue
kidney
64
1
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 9 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
cell line
HepG2
1
See all biosamples
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