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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
2
ATAC-seq
Assay category
4
DNA binding
2
DNA accessibility
Target of assay
9
histone
9
histone modification
narrow histone mark
4
broad histone mark
Date released
August, 2017
3
October, 2017
2
November, 2017
1
March, 2019
Available data
2757
bam
2517
bigWig
1502
tsv
1296
bed narrowPeak
986
fastq
863
bigBed narrowPeak
267
bed broadPeak
bigBed broadPeak
232
bed bed3+
168
tagAlign
155
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
vcf
Organism
6
Homo sapiens
Biosample type
6
tissue
Organ
4
brain
2
pancreas
Project
6
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
4
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
audit.ERROR.category!
audit script error
files.file_type!
bigBed broadPeak
month_released!
August, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
6 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
brain
2
islet of Langerhans
2
cingulate gyrus
1
middle frontal area 46
1
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