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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
DNase-seq
26
ChIP-seq
Assay category
179
DNA accessibility
26
DNA binding
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
Date released
173
June, 2019
20
August, 2017
6
November, 2017
5
October, 2019
1
November, 2020
Available data
3030
bam
2824
bigWig
1563
bed narrowPeak
1313
tsv
fastq
966
bigBed narrowPeak
371
tagAlign
300
bed broadPeak
263
bigBed broadPeak
249
bed bed3+
98
txt
73
zippedFastqFolder
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
15
hic
12
bed bed3
7
bed bedgraph
3
csv
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
205
Homo sapiens
Biosample type
193
tissue
11
primary cell
1
cell line
Organ
78
kidney
46
musculature of body
36
brain
36
limb
30
heart
epithelium
18
ureter
13
vasculature
11
blood vessel
11
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
205
AMP
Genome assembly (visualization)
188
hg19
184
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
fastq
month_released!
August, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
205 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 42 more…
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
cardiac muscle cell
1
+ See 4 more…
cell line
Panc1
1
See all biosamples
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