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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
2
DNase-seq
Assay category
76
DNA binding
2
DNA accessibility
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
63
November, 2017
15
August, 2017
Available data
3367
bam
3149
bigWig
1799
bed narrowPeak
1591
tsv
1326
fastq
1024
bigBed narrowPeak
398
tagAlign
317
bed broadPeak
280
bigBed broadPeak
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
7
bed bedgraph
5
hdf5
3
csv
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
78
Homo sapiens
Biosample type
57
cell line
20
primary cell
1
in vitro differentiated cells
Organ
57
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
vein
1
connective tissue
Project
78
AMP
Genome assembly (visualization)
78
hg19
62
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
files.file_type!
bed bed3+
organ_slims!
vein
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
DNase-seq
cell line
HepG2
57
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
adipocyte
1
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