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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
single cell RNA-seq
2
pCHi-C
Assay category
3
Transcription
Date released
2
March, 2020
1
February, 2021
1
November, 2018
1
September, 2018
Available data
3269
bam
3048
bigWig
1699
bed narrowPeak
1591
tsv
1242
fastq
936
bigBed narrowPeak
398
tagAlign
309
bed broadPeak
272
bigBed broadPeak
268
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
7
bed bedgraph
5
hdf5
3
csv
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
tissue
Organ
1
liver
Project
5
AMP
Genome assembly (visualization)
2
hg19
Lab
5
AMP-T2D consortium
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
organ_slims!
vein
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
5 results
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single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
pancreatic cell
2
tissue
liver
1
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