Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
132
DNA binding
89
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
316
November, 2017
238
August, 2017
88
November, 2018
79
December, 2017
76
February, 2023
56
September, 2018
50
July, 2018
49
October, 2018
44
April, 2018
41
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
24
May, 2022
18
February, 2021
11
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
238
fastq
233
bam
211
bigWig
89
tsv
86
bed narrowPeak
40
tagAlign
27
bed bed3+
24
bigBed narrowPeak
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
235
Homo sapiens
Biosample type
154
tissue
42
in vitro differentiated cells
42
primary cell
Organ
144
pancreas
60
connective tissue
23
epithelium
21
liver
18
adipose tissue
2
musculature of body
Project
238
AMP
Genome assembly (visualization)
206
hg19
200
GRCh38
Lab
238
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
238 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
16
89
1
1
liver
18
1
1
white adipose tissue
12
pancreas
6
adipose tissue
2
3
+ See 3 more…
in vitro differentiated cells
adipocyte
41
1
primary cell
pancreatic alpha cell
10
1
pancreatic beta cell
10
1
skeletal muscle myoblast
9
1
1
pancreatic endocrine cell
8
pancreatic acinar cell
1
See all biosamples
Download