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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
10
March, 2020
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
2816
bam
2585
bigWig
1575
tsv
1256
bed narrowPeak
1210
fastq
766
bigBed narrowPeak
277
bed broadPeak
262
bigBed broadPeak
252
bed bed3+
199
tagAlign
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
bedpe bed3+
16
hic
12
bed bed3
7
bed bedgraph
4
hdf5
3
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
16
Homo sapiens
Biosample type
10
tissue
2
cell line
2
in vitro differentiated cells
2
primary cell
Organ
4
pancreas
2
blood vessel
2
epithelium
2
heart
2
liver
2
musculature of body
2
vasculature
1
kidney
1
vein
Project
15
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
12
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
audit script error
3
inconsistent ontology term
audit.ERROR.category!
audit script error
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
16 results
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Clear Filters
Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
See all biosamples
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