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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
3
ATAC-seq
1
MPRA
Assay category
10
Transcription
3
DNA accessibility
Date released
84
February, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
2957
bam
2714
bigWig
1589
tsv
1307
bed narrowPeak
1164
fastq
774
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
260
bed bed3+
251
tagAlign
153
zippedFastqFolder
98
txt
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
18
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
97
Homo sapiens
Biosample type
94
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
4
skeleton
Project
98
AMP
Genome assembly (visualization)
3
hg19
Lab
89
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
98 results
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RNA microarray
total RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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