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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
22
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
37
Homo sapiens
Biosample type
29
in vitro differentiated cells
8
cell line
Organ
940
pancreas
791
liver
684
connective tissue
514
epithelium
491
adipose tissue
372
heart
342
kidney
258
brain
185
vasculature
blood vessel
bone element
136
artery
115
limb
88
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
37
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
May, 2019
organ_slims!
blood vessel
bone element
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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